| Information on SB Activities on European Level | |
| European Funding initiatives for Systems Biology | |
| SB Centres, Institutes, Networks and Initiatives in Europe | |
| Working Groups active in Systems Biology | |
| ‘Database’, ‘Modelling tools’ and ‘Standards and Ontologies’ | |
| Database | |
| CellML repository (Auckland, NZ): http://www.cellml.org/examples/repository/ | |
| Human Metabolome Database : http://www.hmdb.ca/ | |
| Panther Classification Systems - Panther Pathways: http://www.pantherdb.org/pathway/ | |
| KDBI - Kinetic Data of Biomolecular Interactions : http://xin.cz3.nus.edu.sg/group/kdbi/kdbi.asp | |
| The Systems Biology Researcher Database: http://emb1.bcc.univie.ac.at/cgi-bin/SYSBIOL/Welcome.cgi | |
| Standards and Ontologies | |
| Systems Biology Markup Language: http://sbml.org/ | |
| Systems Biology Graphical Notation: http://www.sbgn.org/ | |
| Systems Biology Ontology:: http://www.biomodels.net/sbo/ | |
| Minimum Information Requested In the Annotation of Models:: http://www.biomodels.net/... | |
| BioPAX: http://www.biopax.org/ | |
| CellML: http://www.cellml.org/ | |
| Modelling tools | |
| Cytoscape: http://www.cytoscape.org/ | |
| Database of Quantitative Cellular Signalling (Bangalore, India), Models: http://doqcs.ncbs.res.in/ | |
| E-Cell Project University Keio, Models: http://ecell.sourceforge.net/ | |
| The Harvey Project, Models: http://harveyproject.science.wayne.edu/development/ | |
| C. elegans, DKFZ, Models: http://mbi.dkfz-heidelberg.de/projects/cellsim/ | |
| Modelling Tools, Models: http://mmtsb.scripps.edu/ | |
| Virtual Cell Portal, Models: http://nrcam.uchc.edu/servlets/VCellPortal | |
| Molecular Simulation Virtual Lab, Models: http://polymer.bu.edu/vmdl/ | |
| ModelDB, Models: http://senselab.med.yale.edu/senselab/modeldb/ | |
| The yeast silicon cell, Models: http://www.bio.vu.nl/hwconf/FP6/ysic/ysicab.html | |
| BioModels Database (Cambridge, UK), Models: http://www.ebi.ac.uk/biomodels/ | |
| GENESIS, Models: http://www.faqs.org/faqs/ai-faq/general/part6/section-11.html | |
| Silicon Cell ready to use, Models: http://www.jjj.bio.vu.nl/ | |
| Virtual Cell Plant, Models: http://www.life.uiuc.edu/plantbio/cell/ | |
| M-Cell, Models: http://www.mcell.cnl.salk.edu/ | |
| JWS Online - Online Cellular Systems Modelling: http://jjj.biochem.sun.ac.za/ | |
| Dizzy stochastic simulations tool : http://magnet.systemsbiology.net/software/Dizzy/ | |
| JSim - a Java based simulation system: http://nsr.bioeng.washington.edu/PLN/Software/ | |
| PyBioS - web server for modeling and simulation of cellular systems : http://pybios.molgen.mpg.de/ | |
| Pasadena Twain ODE solver of the SWB package: http://sbw.sourceforge.net/sbw/software/ | |
| Basis Gillespie Stochastic Simulator : http://www.basis.ncl.ac.uk/software.html | |
| CADLIVE - network construction system : http://www.cadlive.jp/ | |
| CaliBayes - Bayesian calibration of biological simulators: http://www.calibayes.ncl.ac.uk/ | |
| CellDesigner - a modeling tool for biochemical networks: http://www.celldesigner.org/ | |
| CellWare - building computational chassis for systems and synthetic biology : http://www.cellware.org/ | |
| COPASI - Complex Pathway Simulator: http://www.copasi.org/tiki-index.php | |
| PLAS Power Law Analysis and Simulation tool: http://www.dqb.fc.ul.pt/docentes/aferreira/plas.html | |
| Dynetica - a simulator of dynamic networks : http://www.duke.edu/~you/Dynetica_page.htm | |
| E-Cell project: http://www.e-cell.org/ | |
| Gepasi - Biochemical Kinetics Simulator : http://www.gepasi.org/ | |
| STOCKS - Stochastic kinetic simulations: http://www.sysbio.pl/stocks/index.html | |
| Virtual Cell Internet simulation server at NRCAM : http://www.nrcam.uchc.edu/ | |
| Training Systems Biology | |
| Seasonal Schools, Workshops, Symposia in Systems Biology | |
| Meetings and conferences | |
| SB world-wide |